PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Migut.B00488.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Phrymaceae; Erythranthe
Family BBR-BPC
Protein Properties Length: 152aa    MW: 17205.2 Da    PI: 9.2045
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Migut.B00488.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind86.68.6e-2711291121
         GAGA_bind   1 mdddgsre..rnkg.yye....paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalll 86 
                       mdd+g+re  r+k+ + +    +++s+k     q+m  +aerda+i+ernla+sekk a+aerdma lqrd+a+aern+a++erdn++++l++
  Migut.B00488.1.p   1 MDDSGHREngRHKPpQGQwlmqQQPSMK-----QIMGFMAERDAAIQERNLAISEKKTALAERDMAILQRDSAIAERNNAIMERDNAIATLQY 88 
                       9999998878888732223332335555.....************************************************************ PP

         GAGA_bind  87 vensla......salpvgvqvlsgtksidslqqlsepqled 121
                       +en+++      s +p+g ++ +g++++++ qq++++q ++
  Migut.B00488.1.p  89 RENAINssnnnmSPCPPGLSIPRGVQHMHQPQQHQQQQQQH 129
                       ***9988888888899*************999965554443 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062174.8E-151123IPR010409GAGA-binding transcriptional activator
SMARTSM012269.7E-121151IPR010409GAGA-binding transcriptional activator
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MDDSGHRENG RHKPPQGQWL MQQQPSMKQI MGFMAERDAA IQERNLAISE KKTALAERDM  60
AILQRDSAIA ERNNAIMERD NAIATLQYRE NAINSSNNNM SPCPPGLSIP RGVQHMHQPQ  120
QHQQQQQQHI TSSSSSDHWA KHGTNRYITI K*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012856048.13e-80PREDICTED: protein BASIC PENTACYSTEINE6-like
SwissprotQ8L9999e-55BPC6_ARATH; Protein BASIC PENTACYSTEINE6
TrEMBLA0A022Q3T74e-96A0A022Q3T7_ERYGU; Uncharacterized protein (Fragment)
STRINGGLYMA04G02860.14e-57(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.16e-49basic pentacysteine 6